Structure of molecule 54840

Molecule card · MolClass #54840

HTS 03520

HTS 03520: molecular structure, identifiers, source datasets and 12 saved model results in MolClass.

1 source records · 12 model builds with saved results

Explore classification models

Structure and identifiers

Imported compound names
HTS 03520Yeast Bioactive Library Cross-Kingdom · compound_name
MolClass ID
54840
InChIKey
SGRDESXKYWGZFD-UHFFFAOYSA-N
Canonical SMILES
CCCc2c(cnn2(c1ccccc1))C(=O)NC3Cc4ccccc4(C3)
Standard InChI
InChI=1S/C22H23N3O/c1-2-8-21-20(15-23-25(21)19-11-4-3-5-12-19)22(26)24-18-13-16-9-6-7-10-17(16)14-18/h3-7,9-12,15,18H,2,8,13-14H2,1H3,(H,24,26)
Stored Murcko scaffold
n1cc([CH]NC2Cc3ccccc3C2)cn1-c4ccccc4

Registry normalization: MIGRATED_RAW. A registry entry does not establish drug approval or clinical use.

Molecules with the same Murcko scaffold

Exact matches to the stored ring-and-linker framework. Sharing a scaffold does not by itself establish activity or applicability to a model.

No other molecules currently have this stored scaffold.

Calculated molecular properties

Stored descriptor calculations, not measured experimental values.

Hydrogen bond acceptors
3
CDK 2.12 · 2026-08-19
Hydrogen bond donors
1
CDK 2.12 · 2026-08-19
Rotatable bonds
6
CDK 2.12 · 2026-08-19
Topological polar surface area
46.92 Ų
CDK 2.12 · 2026-08-19
Molecular weight
345.438 g/mol
CDK 2.12 · 2026-08-19
XLogP
4.295
CDK 2.12 · 2026-08-19

Saved model predictions

Computational predictions, not experimental measurements or clinical guidance. Results depend on the model build; applicability indicates similarity to its training chemistry.

Mitochondrial Fusion

Ensemble · model #19 · build #137

inactive

Model confidence
85.0%
Applicability domain
In domain
Scaffold similarity
73.5%

Recorded

Anti-fungal drug pump selectivity

Ensemble · model #18 · build #29

inactive

Model confidence
69.9%
Applicability domain
In domain
Scaffold similarity
66.2%

Recorded

Toxcicity

Ensemble · model #17 · build #28

toxicity reported

Model confidence
66.4%
Applicability domain
Outside domain
Scaffold similarity
37.1%

Recorded

Molecule Aggregation

Ensemble · model #16 · build #27

Aggregator

Model confidence
66.9%
Applicability domain
Outside domain
Scaffold similarity
36.9%

Recorded

Metabolite Likeness

Ensemble · model #15 · build #26

ZINC

Model confidence
100.0%
Applicability domain
Outside domain
Scaffold similarity
39.2%

Recorded

Molecule Autofluorescence

LibSVM · model #13 · build #152

Autofluorescence

Model confidence
100.0%
Applicability domain
In domain
Scaffold similarity
52.1%

Recorded

Blood Brain Barrier

RandomForest · model #7 · build #151

BBB+

Model confidence
83.6%
Applicability domain
Outside domain
Scaffold similarity
34.9%

Recorded

Derivation and validation of toxicophores for mutagenicity prediction

RandomForest · model #6 · build #15

nonmutagen

Model confidence
51.0%
Applicability domain
Outside domain
Scaffold similarity
38.4%

Recorded

Benchmark data set for in silico prediction of Ames mutagenicity

Ensemble2 · model #5 · build #134

none

Model confidence
69.0%
Applicability domain
Outside domain
Scaffold similarity
38.3%

Recorded

A predictive model for drug bioaccumulation and bioactivity in Caenorhabditis elegans

NaiveBayes · model #4 · build #14

none

Model confidence
99.8%
Applicability domain
Outside domain
Scaffold similarity
35.6%

Recorded

ADME evaluation in drug discovery: Correlation of Caco-2 permeation with simple molecular properties

Ensemble · model #2 · build #244

app-

Model confidence
97.6%
Applicability domain
Outside domain
Scaffold similarity
31.6%

Recorded

Chemical genetics reveals a complex functional ground state of neural stem cells

Ensemble · model #1 · build #16

Mutual

Model confidence
87.0%
Applicability domain
Outside domain
Scaffold similarity
38.0%

Recorded

Source datasets

Dataset registrations and identifiers stored in MolClass.

  • Yeast Bioactive Library Cross-Kingdom

    Dataset #23 · HTS 03520