Molecule card · MolClass #24099

HMDB03331

HMDB03331: molecular structure, identifiers, source datasets and 0 saved model results in MolClass.

1 source records · 0 model builds with saved results

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Structure and identifiers

Imported compound names: HMDB03331Metabolite Likeness · compound_name
MolClass ID: 24099
InChIKey: GFYLSDSUCHVORB-IOSLPCCCSA-N
Canonical SMILES: CN3C=Nc1c(ncn1C2OC(CO)C(O)C2(O))C3(=N)
Standard InChI: InChI=1S/C11H15N5O4/c1-15-3-14-10-6(9(15)12)13-4-16(10)11-8(19)7(18)5(2-17)20-11/h3-5,7-8,11-12,17-19H,2H2,1H3/t5-,7-,8-,11-/m1/s1
Stored Murcko scaffold: n1cn(c2N=CN[CH]c12)C3OCCC3

Registry normalization: MIGRATED_RAW. A registry entry does not establish drug approval or clinical use.

Molecules with the same Murcko scaffold

Exact matches to the stored ring-and-linker framework. Sharing a scaffold does not by itself establish activity or applicability to a model.

88847-89-6#7724
3868-31-3#8908
4691-65-0#9018
5550-12-9#9029
HMDB01044#24222
NC1NC(=O)c2ncn(C3OC(CO)C(O)C3O)c2N=1#152024
O=c1[nH]cnc2c1ncn2C1OC(CO)C(O)C1O#156213
NC1NC(=O)c2ncn(C3CC(O)C(CO)O3)c2N=1#156398

Calculated molecular properties

Stored descriptor calculations, not measured experimental values.

Hydrogen bond acceptors: 8; CDK 2.12 · 2026-08-19
Hydrogen bond donors: 4; CDK 2.12 · 2026-08-19
Rotatable bonds: 2; CDK 2.12 · 2026-08-19
Topological polar surface area: 127.19 Å²; CDK 2.12 · 2026-08-19
Molecular weight: 281.268 g/mol; CDK 2.12 · 2026-08-19
XLogP: -0.254; CDK 2.12 · 2026-08-19

Saved model predictions

Computational predictions, not experimental measurements or clinical guidance. Results depend on the model build; applicability indicates similarity to its training chemistry.

No saved predictions yet. Explore classification models to choose a prediction.

Source datasets

Dataset registrations and identifiers stored in MolClass.

Metabolite Likeness
Dataset #15 · HMDB03331