Molecule card · MolClass #21389

2970

2970: molecular structure, identifiers, source datasets and 0 saved model results in MolClass.

1 source records · 0 model builds with saved results

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Structure and identifiers

MolClass ID: 21389
InChIKey: VFHCWZOOWGZTFF-UHFFFAOYSA-N
Canonical SMILES: NC(=O)C1CCN(CC1)Cc2ccc(cc2)C(=O)Nc4ccc(cc4(C(=O)Nc3ccc(cn3)Cl))Cl
Standard InChI: InChI=1S/C26H25Cl2N5O3/c27-19-5-7-22(21(13-19)26(36)32-23-8-6-20(28)14-30-23)31-25(35)18-3-1-16(2-4-18)15-33-11-9-17(10-12-33)24(29)34/h1-8,13-14,17H,9-12,15H2,(H2,29,34)(H,31,35)(H,30,32,36)
Stored Murcko scaffold: n1ccccc1N[CH]c2ccccc2N[CH]c3ccc(cc3)CN4CCCCC4

Registry normalization: MIGRATED_RAW. A registry entry does not establish drug approval or clinical use.

Molecules with the same Murcko scaffold

Exact matches to the stored ring-and-linker framework. Sharing a scaffold does not by itself establish activity or applicability to a model.

1608#20082
2965#21384
4554#22894
4697#23030
4701#23034

Calculated molecular properties

Stored descriptor calculations, not measured experimental values.

Hydrogen bond acceptors: 8; CDK 2.12 · 2026-08-19
Hydrogen bond donors: 3; CDK 2.12 · 2026-08-19
Rotatable bonds: 9; CDK 2.12 · 2026-08-19
Topological polar surface area: 117.42 Å²; CDK 2.12 · 2026-08-19
Molecular weight: 526.415 g/mol; CDK 2.12 · 2026-08-19
XLogP: 4.052; CDK 2.12 · 2026-08-19

Saved model predictions

Computational predictions, not experimental measurements or clinical guidance. Results depend on the model build; applicability indicates similarity to its training chemistry.

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Source datasets

Dataset registrations and identifiers stored in MolClass.

Thrombin Molecule Binding
Dataset #14 · 2970